HDAC6 - histone deacetylase 6 Gene
Also Known as HD6; JM21; CPBHM; PPP1R90
Species: Homo sapiens
About HDAC6
This gene has 84 transcripts (splice variants), 182 orthologues, 10 paralogues and is associated with 2 phenotypes. Ubiquitous expression in kidney (RPKM 18.6), testis (RPKM 15.9) and 25 other tissues.
Summary
Histones play a critical role in transcriptional regulation, cell cycle progression, and developmental events. Histone acetylation/deacetylation alters chromosome structure and affects transcription factor access to DNA. The protein encoded by this gene belongs to class II of the histone deacetylase/acuc/apha family. It contains an internal duplication of two catalytic domains which appear to function independently of each Other. This protein possesses histone deacetylase activity and represses transcription. [provided by RefSeq, Jul 2008]
HDAC6 Products (17)
| mRNA | Protein | Name |
|---|---|---|
| XM_047441706.1 | XP_047297662.1 | histone deacetylase 6 isoform X3 |
| NM_001321225.2 | NP_001308154.1 | histone deacetylase 6 isoform a |
| NR_135591.1 | ||
| NM_001321229.1 | NP_001308158.1 | histone deacetylase 6 isoform b |
| XM_047441704.1 | XP_047297660.1 | histone deacetylase 6 isoform X2 |
| NM_001321226.2 | NP_001308155.1 | histone deacetylase 6 isoform b |
| NM_001321231.2 | NP_001308160.1 | histone deacetylase 6 isoform c |
| NR_135593.2 | ||
| XM_047441705.1 | XP_047297661.1 | histone deacetylase 6 isoform X3 |
| NM_006044.4 | NP_006035.2 | histone deacetylase 6 isoform b |
| XR_007068179.1 | ||
| NM_001321227.2 | NP_001308156.1 | histone deacetylase 6 isoform b |
| NM_001321228.2 | NP_001308157.1 | histone deacetylase 6 isoform b |
| XM_047441703.1 | XP_047297659.1 | histone deacetylase 6 isoform X1 |
| NM_001321230.2 | NP_001308159.1 | histone deacetylase 6 isoform c |
| XM_047441707.1 | XP_047297663.1 | histone deacetylase 6 isoform X4 |
| NR_135592.2 |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in aggresome |
IDA
IDA: Inferred from direct assay
|
14675537 | GOA |
| located in caveola |
IDA
IDA: Inferred from direct assay
|
18356165 | GOA |
| located in cell leading edge |
IDA
IDA: Inferred from direct assay
|
12024216 | GOA |
| located in centrosome |
IDA
IDA: Inferred from direct assay
|
26246421 | GOA |
| located in ciliary basal body |
IDA
IDA: Inferred from direct assay
|
17604723 | GOA |
| located in cytoplasm |
IDA
IDA: Inferred from direct assay
|
24687993 | GOA |
| part of histone deacetylase complex |
IDA
IDA: Inferred from direct assay
|
11948178 | GOA |
| located in inclusion body |
IDA
IDA: Inferred from direct assay
|
16192271 | GOA |
| located in microtubule |
IDA
IDA: Inferred from direct assay
|
12620231 | GOA |
| part of microtubule associated complex |
IDA
IDA: Inferred from direct assay
|
19228685 | GOA |
| located in perinuclear region of cytoplasm |
IDA
IDA: Inferred from direct assay
|
12024216 | GOA |
HDAC6 Protein Structure
Hist_deacetyl: Histone deacetylase domain (102 - 402)
Hist_deacetyl: Histone deacetylase domain (496 - 798)
zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein (1133 - 1193)
- 0
- 200
- 400
- 600
- 800
- 1000
- 1215 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
histone deacetylase 6 |
|
HDAC6 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
HDAC6 | Q9UBN7 | PRKCA | Homo sapiens | P17252 | 21952047 | |
|
Intra
|
HDAC6 | Q9UBN7 | CYLD | Homo sapiens | Q9NQC7 | 19893491 | |
|
Intra
|
HDAC6 | Q9UBN7 | CYLD | Homo sapiens | Q9NQC7 | 19893491 | |
|
Intra
|
HDAC6 | Q9UBN7 | DCTN1 | Homo sapiens | Q14203-5 | 32814053 | |
|
Intra
|
HDAC6 | Q9UBN7 | DCTN1 | Homo sapiens | Q14203-5 | 32814053 | |
|
Intra
|
HDAC6 | Q9UBN7 | DCTN1 | Homo sapiens | Q14203-5 | 32814053 | |
|
Intra
|
HDAC6 | Q9UBN7 | EGFR | Homo sapiens | P00533 | 24658140 | |
|
Intra
|
HDAC6 | Q9UBN7 | EGFR | Homo sapiens | P00533 | 20029029 | |
|
Intra
|
HDAC6 | Q9UBN7 | EGFR | Homo sapiens | P00533 | 20029029 | |
|
Intra
|
HDAC6 | Q9UBN7 | EGFR | Homo sapiens | P00533 | 24658140 | |
|
Intra
|
HDAC6 | Q9UBN7 | PROM1 | Homo sapiens | O43490 | 23084749 | |
|
Intra
|
HDAC6 | Q9UBN7 | PROM1 | Homo sapiens | O43490 | 23084749 | |
|
Cross
|
HDAC6 | Q9UBN7 | Cttn | Mus musculus | Q60598 | 21847094 | |
|
Intra
|
HDAC6 | Q9UBN7 | MYD88 | Homo sapiens | Q99836 | 29281743 | |
|
Intra
|
HDAC6 | Q9UBN7 | CTNNB1 | Homo sapiens | P35222 | 18356165 | |
|
Intra
|
HDAC6 | Q9UBN7 | CTNNB1 | Homo sapiens | P35222 | 23084749 | |
|
Intra
|
HDAC6 | Q9UBN7 | ATP13A2 | Homo sapiens | Q9NQ11 | 22645275 | |
|
Intra
|
HDAC6 | Q9UBN7 | PRKN | Homo sapiens | O60260 | 19036992 | |
|
Cross
|
HDAC6 | Q9UBN7 | GRK2 | Bos taurus | P21146 | 22193721 | |
|
Cross
|
HDAC6 | Q9UBN7 | GRK2 | Bos taurus | P21146 | 22193721 | |
|
Cross
|
HDAC6 | Q9UBN7 | Cdc20 | Rattus norvegicus | Q62623 | 19167333 | |
|
Cross
|
HDAC6 | Q9UBN7 | Cdc20 | Rattus norvegicus | Q62623 | 19167333 | |
|
Cross
|
HDAC6 | Q9UBN7 | Tax | Human T-cell leukemia virus 1 | P03409 | 21532619 | |
|
Cross
|
HDAC6 | Q9UBN7 | Tax | Human T-cell leukemia virus 1 | P03409 | 21532619 | |
|
Cross
|
HDAC6 | Q9UBN7 | tat | Human immunodeficiency virus | P04610 | 21220424 |
Recombinant HDAC6 Proteins
| Cat. No. | Product Name | Accession | Purity |
|---|---|---|---|
| HY-P72224 | HDAC6 Protein, Human (His) | Q9UBN7-1 (M489-E840) | ≥ 90%, as determined by reducing SDS-PAGE. |
HDAC6 Antibodies
| Cat. No. | Product Name | Application | Reactivity |
|---|---|---|---|
| HY-P80154 | HDAC6 Antibody (YA390) | WB, ICC/IF, IHC-P, IP | Human |
| HY-P80701 | HDAC6 Antibody (YA740) | WB | Human, Rat |
| HY-P80701A | HDAC6 Antibody (YA740)(PBS only) | WB | Human, Rat |
| HY-P86103 | HDAC6 Antibody (YA5795) | WB, IHC-P, ICC/IF, IP, ELISA | Human, Mouse, Rat |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Liver Carcinoma In Situ |
|
|
| Mature T-Cell And Nk-Cell Lymphoma |
|
|
| Atrial Septal Defect 8 |
|
|
| Alexander Disease |
|
|
| Charcot-Marie-Tooth Disease, Axonal, Type 2e |
|
|
| Joubert Syndrome 8 |
|
|
| Neuromuscular Disease |
|
|
| Spinal And Bulbar Muscular Atrophy, X-Linked 1 |
|
|
| Charcot-Marie-Tooth Disease And Deafness |
|
|
| Charcot-Marie-Tooth Disease |
|
|
| Chondrodysplasia With Platyspondyly, Distinctive Brachydactyly, Hydrocephaly, And Microphthalmia |
|
|
| Peripheral Nervous System Disease |
|
|
| Autosomal Dominant Polycystic Kidney Disease |
|
|
| Prolapse Of Urethra |
|
|
| Rett Syndrome |
|
|
| B-Cell Lymphoma |
|
|
| Nervous System Disease |
|
|
| Polycystic Kidney Disease |
|
|
| Joubert Syndrome 1 |
|
|
| Amyotrophic Lateral Sclerosis 1 |
|
|
| Meckel Syndrome, Type 1 |
|
|
| Brachydactyly |
|
|
| Inclusion Body Myopathy With Paget Disease Of Bone And Frontotemporal Dementia |
|
|
| Leukemia, Acute Myeloid |
|
|
| Microphthalmia |
|
|
| Breast Cancer |
|
|
| Peripheral T-Cell Lymphoma |
|
|
| Charcot-Marie-Tooth Disease, Axonal, Type 2f |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Bos taurus | HDAC6 | VGNC | VGNC:50613 |
| Rattus norvegicus | HDAC6 | RGD | RGD:619981 |
| Macaca mulatta | HDAC6 | VGNC | VGNC:73164 |
| Mus musculus | HDAC6 | MGD | MGI:1333752 |
| Canis familiaris | HDAC6 | VGNC | VGNC:50630 |
| Felis catus | HDAC6 | VGNC | VGNC:62769 |
| Others | HDAC6 | NCBI |