Hdac6 - histone deacetylase 6 Gene
Also Known as Hd6; Sfc6; Hdac5; mHDA2
Species: Mus musculus
About Hdac6
This gene has 10 transcripts (splice variants), 182 orthologues, 10 paralogues and is associated with 10 phenotypes. Ubiquitous expression in genital fat pad adult (RPKM 65.5), whole brain E14.5 (RPKM 26.3) and 27 other tissues.
Summary
Enables cytoskeletal protein binding activity; protein deacetylase activity; and ubiquitin binding activity. Involved in several processes, including positive regulation of peptidyl-serine phosphorylation; protein deacetylation; and protein destabilization. Acts upstream of or within several processes, including aggresome assembly; cellular protein metabolic process; and neuron projection morphogenesis. Located in several cellular components, including dendrite; microtubule cytoskeleton; and perikaryon. Part of protein-containing complex. Is expressed in several structures, including central nervous system; early embryo; future midbrain; gut gland; and lung. Human ortholog(s) of this gene implicated in chondrodysplasia with platyspondyly, distinctive brachydactyly, hydrocephaly, and microphthalmia. Orthologous to human HDAC6 (histone deacetylase 6). [provided by Alliance of Genome Resources, Apr 2022]
Hdac6 Products (7)
| mRNA | Protein | Name |
|---|---|---|
| NM_001411606.1 | NP_001398535.1 | histone deacetylase 6 isoform 2 |
| NM_001130416.2 | NP_001123888.1 | histone deacetylase 6 isoform 2 |
| NM_001411608.1 | NP_001398537.1 | histone deacetylase 6 isoform 3 |
| NM_010413.4 | NP_034543.3 | histone deacetylase 6 isoform 2 |
| NM_001411612.1 | NP_001398541.1 | histone deacetylase 6 isoform 4 |
| NM_001411604.1 | NP_001398533.1 | histone deacetylase 6 isoform 1 |
| NM_001411607.1 | NP_001398536.1 | histone deacetylase 6 isoform 2 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables beta-tubulin binding |
IDA
IDA: Inferred from direct assay
|
12606581 | MGI |
| enables histone deacetylase activity |
IDA
IDA: Inferred from direct assay
|
9891014 | MGI |
| enables histone deacetylase activity |
IMP
IMP: Inferred from mutant phenotype
|
24882211 | MGI |
| enables microtubule binding |
IDA
IDA: Inferred from direct assay
|
19893491 | MGI |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
11689694 | MGI |
| enables tau protein binding |
IPI
IPI: Inferred from physical interaction
|
19457097 | MGI |
| enables tubulin deacetylase activity |
IDA
IDA: Inferred from direct assay
|
12606581 | MGI |
| enables tubulin deacetylase activity |
IGI
IGI: Inferred from genetic interaction
|
27430620 | MGI |
| enables tubulin deacetylase activity |
IMP
IMP: Inferred from mutant phenotype
|
19457097 | MGI |
| enables ubiquitin binding |
IDA
IDA: Inferred from direct assay
|
11689694 | MGI |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in axon |
IDA
IDA: Inferred from direct assay
|
16933150 | MGI |
| located in cytoplasm |
IDA
IDA: Inferred from direct assay
|
11689694 | MGI |
| located in cytosol |
IDA
IDA: Inferred from direct assay
|
19893491 | MGI |
| located in dendrite |
IDA
IDA: Inferred from direct assay
|
16933150 | MGI |
| located in microtubule cytoskeleton |
IDA
IDA: Inferred from direct assay
|
12606581 | MGI |
| located in neuron projection |
IDA
IDA: Inferred from direct assay
|
24113571 | MGI |
| located in neuronal cell body |
IDA
IDA: Inferred from direct assay
|
24113571 | MGI |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
19893491 | MGI |
| located in perikaryon |
IDA
IDA: Inferred from direct assay
|
16933150 | MGI |
| part of protein-containing complex |
IPI
IPI: Inferred from physical interaction
|
17785525 | MGI |
Hdac6 Protein Structure
Arginase_HDAC: cl17011 (97 - 433)
HDAC6-dom2: cd10003 (483 - 833)
zf-UBP: pfam02148 (1066 - 1128)
- 0
- 200
- 400
- 600
- 800
- 1000
- 1149 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
histone deacetylase 6 |
|
|
Hdac6 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
Hdac6 | Q9Z2V5 | Cyld | Mus musculus | Q80TQ2 | 19893491 | |
|
Intra
|
Hdac6 | Q9Z2V5 | Cyld | Mus musculus | Q80TQ2 | 19893491 | |
|
Cross
|
Hdac6 | Q9Z2V5 | GRK2 | Bos taurus | P21146 | 22193721 | |
|
Cross
|
Hdac6 | Q9Z2V5 | ubiq_chick | Gallus gallus | P62973 | 25342804 | |
|
Cross
|
Hdac6 | Q9Z2V5 | Ccdc141 | Rattus norvegicus | D3ZEY0 | 27737934 | |
|
Cross
|
Hdac6 | Q9Z2V5 | Ccdc141 | Rattus norvegicus | D3ZEY0 | 27737934 |